Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion
2012-01-01 Wagstaff, Bj; Hedges, Dj; Derbes, Rs; Campos Sanchez, R; Chiaromonte, Francesca; Makova, Kd; Roy Engel, Am
ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
2006-01-01 Taylor, J; Tyekucheva, S; King, Dc; Hardison, Rc; Miller, W; Chiaromonte, Francesca
A matter of life and death: how microsatellites emerge in and vanish from the human genome
2011-01-01 Kelkar, Yd; Eckert, Ka; Chiaromonte, Francesca; Makova, Kd
Sufficient dimension reduction in regressions with categorical predictors
2002-01-01 Chiaromonte, Francesca; Cook, Rd; Li, B.
Distinguishing regulatory DNA from neutral sites
2003-01-01 Elnitski, L; Hardison, Rc; Li, J; Yang, S; Kolbe, D; Eswara, P; O’Connor, M; Schwartz, S; Miller, W; Chiaromonte, Francesca
Insertions and deletions are male-biased too: a whole-genome analysis in rodents
2004-01-01 Makova, Kd; Yang, S; Chiaromonte, Francesca
Genomic environment predicts expression patterns on the human inactive X chromosome
2006-01-01 Carrel, L; Park, C; Tyekucheva, S; Dunn, J; Chiaromonte, Francesca; Makova, Kd
Dynamics of the Epigenetic Landscape During Erythroid Differentiation after GATA1 Restoration
2011-01-01 Wu, W; Cheng, Y; Keller, Ca; Kumar, Sa; Ernst, J; Mishra, T; Morrissey, C; Dorman, Cm; Chen, Kb; Drautz, D; Giardine, B; Shibata, Y; Song, L; Crawford, Ge; Furey, Ts; Kellis, M; Miller, W; Taylor, J.; Schuster, Sc; Zhang, Y; Chiaromonte, Francesca; Blobel, Gl; Weiss, Mj; Hardison, Rc
A macaque’s-eye view of human insertions and deletions: differences in mechanisms
2007-01-01 Kvikstad, Em; Tyekucheva, S; Chiaromonte, Francesca; Makova, Kd
Complete Khoisan and Bantu genomes from southern Africa
2010-01-01 Stephan, Schuster; Webb, Miller; Aakrosh, Ratan; Lynn, Tomsho; Belinda, Giardine; Lindsay, Kasson; Robert, Harris; Desiree, Petersen; Fangqing, Zhao; Ji, Qi; Can, Alkan; Jeffrey, Kidd; Yazhou, Sun; Daniela, Drautz; Pascal, Bouffard; Donna, Muzny; Jeffrey, Reid; Lynne, Nazareth; Qingyu, Wang; Richard, Burhans; Cathy, Riemer; Nicola, Wittekindt; Priya, Moorjani; Elizabeth, Tindall; Charles, Danko; Wee Siang, Teo; Anne, Buboltz; Zhenhai, Zhang; Qianyi, Ma; Arno, Oosthuysen; Abraham, Steenkamp; Hermann, Oostuisen; Philippus, Venter; John, Gajewski; Yu, Zhang; Franklin, Pugh; Kateryna, Makova; Anton, Nekrutenko; Elaine, Mardis; Nick, Patterson; Tom, Pringle; Chiaromonte, Francesca; James, Mullikin; Evan, Eichler; Ross, Hardison; Richard, Gibbs; Timothy, Harkins; Vanessa M., Hayes
Segmenting the human genome based on states of neutral genetic divergence.
2013-01-01 Kuruppumullage Don, P; Andanda, G; Chiaromonte, Francesca; Makova, Kd
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications and mRNA expression
2009-01-01 Cheng, Y; Wu, W; Kumar, Sa; Yu, D; Deng, W; Tripic, T; King, Dc; Chen, Kb; Zhang, Y; Drautz, D; Giardine, B; Schuster, Sc; Miller, W; Chiaromonte, Francesca; Zhang, Yu; Blobel, Ga; Weiss, Mj; Hardison, Rc
Ride the wavelet: a multi-scale analysis of genomic context flanking small insertions and deletions
2009-01-01 Kvikstad, Em; Chiaromonte, Francesca; Makova, Kd
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
2008-01-01 Cheng, Y.; King, D. C.; Dore, L. C.; Zhang, X.; Zhou, Y.; Zhang, Y; Dorman, C; Abebe, D; Kumar, S; Chiaromonte, Francesca; Miller, W; Green, Rd; Weiss, Mj; Hardison, Rc
Finding cis-regulatory modules using comparative genomics: some lessons from ENCODE data
2007-01-01 King, Dc; Taylor, J; Zhang, Y; Cheng, Y; Lawson, Ha; Martin, J; ENCODE groups for Transcriptional, Regulation; Multispecies, Alignment; Chiaromonte, Francesca; Miller, W; Hardison, Rc
Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison
2006-01-01 Taylor, J; Tyekucheva, S; Zody, M; Chiaromonte, Francesca; Makova, Kd
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
2004-01-01 Hillier, L; International Chicken Genome Sequencing Consortium, Including; Chiaromonte, Francesca
Patterns of insertions and their covariation with substitutions in the rat, mouse and human genomes
2004-01-01 Yang, S; Smit, Af; Schwartz, S; Chiaromonte, Francesca; Roskin, Km; Haussler, D; Miller, W; Hardison, Rc
Co-variation in frequencies of substitution, deletion, transposition and recombination during eutherian evolution
2003-01-01 Hardison, Rc; Roskin, Km; Yang, S; Diekhans, M; Kent, Wj; Weber, R; Elnitski, L; Li, J; O’Connor, M; Kolbe, D; Schwartz, S; Furey, Ts; Whelan, S; Goldman, N; Smit, A; Miller, W; Chiaromonte, Francesca; Haussler, D.
Novel Metrics for Evaluation of Ensemble Forecasts of Tropical Cyclone Structure
2009-01-01 Veren, D; Evans, Jl; Jones, S; Chiaromonte, Francesca
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion | 1-gen-2012 | Wagstaff, Bj; Hedges, Dj; Derbes, Rs; Campos Sanchez, R; Chiaromonte, Francesca; Makova, Kd; Roy Engel, Am | |
| ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements | 1-gen-2006 | Taylor, J; Tyekucheva, S; King, Dc; Hardison, Rc; Miller, W; Chiaromonte, Francesca | |
| A matter of life and death: how microsatellites emerge in and vanish from the human genome | 1-gen-2011 | Kelkar, Yd; Eckert, Ka; Chiaromonte, Francesca; Makova, Kd | |
| Sufficient dimension reduction in regressions with categorical predictors | 1-gen-2002 | Chiaromonte, Francesca; Cook, Rd; Li, B. | |
| Distinguishing regulatory DNA from neutral sites | 1-gen-2003 | Elnitski, L; Hardison, Rc; Li, J; Yang, S; Kolbe, D; Eswara, P; O’Connor, M; Schwartz, S; Miller, W; Chiaromonte, Francesca | |
| Insertions and deletions are male-biased too: a whole-genome analysis in rodents | 1-gen-2004 | Makova, Kd; Yang, S; Chiaromonte, Francesca | |
| Genomic environment predicts expression patterns on the human inactive X chromosome | 1-gen-2006 | Carrel, L; Park, C; Tyekucheva, S; Dunn, J; Chiaromonte, Francesca; Makova, Kd | |
| Dynamics of the Epigenetic Landscape During Erythroid Differentiation after GATA1 Restoration | 1-gen-2011 | Wu, W; Cheng, Y; Keller, Ca; Kumar, Sa; Ernst, J; Mishra, T; Morrissey, C; Dorman, Cm; Chen, Kb; Drautz, D; Giardine, B; Shibata, Y; Song, L; Crawford, Ge; Furey, Ts; Kellis, M; Miller, W; Taylor, J.; Schuster, Sc; Zhang, Y; Chiaromonte, Francesca; Blobel, Gl; Weiss, Mj; Hardison, Rc | |
| A macaque’s-eye view of human insertions and deletions: differences in mechanisms | 1-gen-2007 | Kvikstad, Em; Tyekucheva, S; Chiaromonte, Francesca; Makova, Kd | |
| Complete Khoisan and Bantu genomes from southern Africa | 1-gen-2010 | Stephan, Schuster; Webb, Miller; Aakrosh, Ratan; Lynn, Tomsho; Belinda, Giardine; Lindsay, Kasson; Robert, Harris; Desiree, Petersen; Fangqing, Zhao; Ji, Qi; Can, Alkan; Jeffrey, Kidd; Yazhou, Sun; Daniela, Drautz; Pascal, Bouffard; Donna, Muzny; Jeffrey, Reid; Lynne, Nazareth; Qingyu, Wang; Richard, Burhans; Cathy, Riemer; Nicola, Wittekindt; Priya, Moorjani; Elizabeth, Tindall; Charles, Danko; Wee Siang, Teo; Anne, Buboltz; Zhenhai, Zhang; Qianyi, Ma; Arno, Oosthuysen; Abraham, Steenkamp; Hermann, Oostuisen; Philippus, Venter; John, Gajewski; Yu, Zhang; Franklin, Pugh; Kateryna, Makova; Anton, Nekrutenko; Elaine, Mardis; Nick, Patterson; Tom, Pringle; Chiaromonte, Francesca; James, Mullikin; Evan, Eichler; Ross, Hardison; Richard, Gibbs; Timothy, Harkins; Vanessa M., Hayes | |
| Segmenting the human genome based on states of neutral genetic divergence. | 1-gen-2013 | Kuruppumullage Don, P; Andanda, G; Chiaromonte, Francesca; Makova, Kd | |
| Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications and mRNA expression | 1-gen-2009 | Cheng, Y; Wu, W; Kumar, Sa; Yu, D; Deng, W; Tripic, T; King, Dc; Chen, Kb; Zhang, Y; Drautz, D; Giardine, B; Schuster, Sc; Miller, W; Chiaromonte, Francesca; Zhang, Yu; Blobel, Ga; Weiss, Mj; Hardison, Rc | |
| Ride the wavelet: a multi-scale analysis of genomic context flanking small insertions and deletions | 1-gen-2009 | Kvikstad, Em; Chiaromonte, Francesca; Makova, Kd | |
| Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif | 1-gen-2008 | Cheng, Y.; King, D. C.; Dore, L. C.; Zhang, X.; Zhou, Y.; Zhang, Y; Dorman, C; Abebe, D; Kumar, S; Chiaromonte, Francesca; Miller, W; Green, Rd; Weiss, Mj; Hardison, Rc | |
| Finding cis-regulatory modules using comparative genomics: some lessons from ENCODE data | 1-gen-2007 | King, Dc; Taylor, J; Zhang, Y; Cheng, Y; Lawson, Ha; Martin, J; ENCODE groups for Transcriptional, Regulation; Multispecies, Alignment; Chiaromonte, Francesca; Miller, W; Hardison, Rc | |
| Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison | 1-gen-2006 | Taylor, J; Tyekucheva, S; Zody, M; Chiaromonte, Francesca; Makova, Kd | |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution | 1-gen-2004 | Hillier, L; International Chicken Genome Sequencing Consortium, Including; Chiaromonte, Francesca | |
| Patterns of insertions and their covariation with substitutions in the rat, mouse and human genomes | 1-gen-2004 | Yang, S; Smit, Af; Schwartz, S; Chiaromonte, Francesca; Roskin, Km; Haussler, D; Miller, W; Hardison, Rc | |
| Co-variation in frequencies of substitution, deletion, transposition and recombination during eutherian evolution | 1-gen-2003 | Hardison, Rc; Roskin, Km; Yang, S; Diekhans, M; Kent, Wj; Weber, R; Elnitski, L; Li, J; O’Connor, M; Kolbe, D; Schwartz, S; Furey, Ts; Whelan, S; Goldman, N; Smit, A; Miller, W; Chiaromonte, Francesca; Haussler, D. | |
| Novel Metrics for Evaluation of Ensemble Forecasts of Tropical Cyclone Structure | 1-gen-2009 | Veren, D; Evans, Jl; Jones, S; Chiaromonte, Francesca |
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